CPSC 501

Fall 2024

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Programming for Genomics
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Credit: 4 hours.

Same as IB 501. See IB 501.

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CRN Type Section Time Day Location Instructor Section Details
66842
Discussion/
Recitation
A
1:00PM -2:50PM
MW
2083 Natural History Building
Catchen, J
Part of Term:
1
Date Range:
08/26/24-12/11/24
Section Info:
Students will learn to think algorithmically by constructing a biological hypothesis, and implementing code or deploying an existing code implementation, to test that hypothesis. Students will learn to use UNIX and to program in Python, using biological data sets from high-throughput sequencing projects. We will cover major genomics approaches and the algorithms that underlie them, including K-mer analysis, genome and transcriptome assembly, databases and SQL, and visualization techniques.
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