IB 501

Fall 2022 Part of Term 1

Part of Term 1
Aug 22-Dec 7

Programming for Genomics

SHOW FINAL EXAM SCHEDULE

Credit: 4 hours.

Students will learn to think algorithmically by constructing a biological hypothesis, and implementing code or deploying an existing code implementation, to test that hypothesis. Students will learn to use UNIX and to program in Python, using biological data sets from high-throughput sequencing projects. We will cover major genomics approaches and the algorithms that underlie them, including K-mer analysis, genome and transcriptome assembly, databases and SQL, and visualization techniques.

Same as CPSC 501. 4 graduate hours. No professional credit. Prerequisite: Courses in Ecology, Evolution, and Molecular Biology, or consent of instructor.

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IB 501 class schedule data for fall 2022
	CRN	Type	Section	Time	Day	Location	Instructor	Section Details
	66838	Discussion/ Recitation	A	1:00PM -2:50PM	MW	Natural History Building	Catchen, J Madrigal, G	Part of Term: 1 Date Range: 08/22/22-12/07/22 Section Info: Students will learn to think algorithmically by constructing a biological hypothesis, and implementing code or deploying an existing code implementation, to test that hypothesis. Students will learn to use UNIX and to program in Python, using biological data sets from high-throughput sequencing projects. We will cover major genomics approaches and the algorithms that underlie them, including K-mer analysis, genome and transcriptome assembly, databases and SQL, and visualization techniques.